CLIPper: Difference between revisions

From UFRC
Jump to navigation Jump to search
Maxprok (talk | contribs)
No edit summary
No edit summary
Line 23: Line 23:


<!--Modules-->
<!--Modules-->
==Required Modules==
==Environment Modules==
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
* {{#var:app}}
<!--
===Parallel (OpenMP)===
* intel
* {{#var:app}}
===Parallel (MPI)===
* intel
* openmpi
* {{#var:app}}
-->
==System Variables==
==System Variables==
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory

Revision as of 16:33, 10 June 2022

Description

clipper website  

CLIPper - CLIP peak enrichment recognition

A tool to detect CLIP-seq peaks.

Environment Modules

Run module spider clipper to find out what environment modules are available for this application.

System Variables

  • HPC_CLIPPER_DIR - installation directory
  • HPC_CLIPPER_BIN - executable directory




Citation

If you publish research that uses clipper you have to cite it as follows:

Lovci et. al. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nat Struct Mol Biol. 2013 Dec;20(12):1434-42. doi: 10.1038/nsmb.2699. Epub 2013 Nov 10.