Difference between revisions of "SNeP"
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| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|snep}} | |{{#vardefine:app|snep}} | ||
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) trajectories estimation through Linkage Disequilibrium (LD). Calculations are based on genome-wide genotype data | + | SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) trajectories estimation through Linkage Disequilibrium (LD). Calculations are based on genome-wide genotype data. |
<!--Modules--> | <!--Modules--> | ||
| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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| − | < | ||
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | [http://journal.frontiersin.org/article/10.3389/fgene.2015.00109/abstract Barbato M, Orozco-terWengel P, Tapio M and Bruford MW (2015). | + | [http://journal.frontiersin.org/article/10.3389/fgene.2015.00109/abstract Barbato M, Orozco-terWengel P, Tapio M and Bruford MW (2015). Front. Genet. 6:109. doi: 10.3389/fgene.2015.00109] |
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| − | Front. Genet. 6:109. doi: 10.3389/fgene.2015.00109] | ||
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Latest revision as of 16:23, 10 June 2022
Description
SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) trajectories estimation through Linkage Disequilibrium (LD). Calculations are based on genome-wide genotype data.
Environment Modules
Run module spider snep to find out what environment modules are available for this application.
System Variables
- HPC_SNEP_DIR - installation directory
Citation
If you publish research that uses snep you have to cite it as follows: