Difference between revisions of "Mash"

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m (Text replacement - "#uppercase" to "uc")
 
Line 21: Line 21:
  
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* gcc/5.2.0
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory

Latest revision as of 14:56, 10 June 2022

Description

mash website  

Fast genome and metagenome distance estimation using MinHash

Environment Modules

Run module spider mash to find out what environment modules are available for this application.

System Variables

  • HPC_MASH_DIR - installation directory