Difference between revisions of "Swarm"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
|||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category:Data | + | [[Category:Software]][[Category:Data Data Analysis]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|swarm}} | |{{#vardefine:app|swarm}} | ||
Revision as of 13:54, 3 June 2022
Description
Swarm us a robust and fast clustering method for amplicon-based studies. The purpose of swarm is to provide a novel clustering algorithm to handle large sets of amplicons. Traditional clustering algorithms results are strongly input-order dependent, and rely on an arbitrary global clustering threshold. swarm results are resilient to input-order changes and rely on a small local linking threshold d, the maximum number of differences between two amplicons. swarm forms stable high-resolution clusters, with a high yield of biological information.
Required Modules
Serial
- gcc/4.7.2
- swarm
System Variables
- HPC_SWARM_DIR
- HPC_SWARM_BIN