Ibdne: Difference between revisions
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
| Line 32: | Line 33: | ||
{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
WRITE_ADDITIONAL_INSTRUCTIONS_ON_RUNNING_THE_SOFTWARE_IF_NECESSARY | |||
|}} | |}} | ||
<!-- | <!--Job Scripts--> | ||
{{#if: {{#var: | {{#if: {{#var: job}}|==Job Script Examples== | ||
See the [[{{PAGENAME}} | See the [[{{PAGENAME}}_Job_Scripts]] page for {{#var: app}} Job script examples. | ||
|}} | |}} | ||
<!--Policy--> | <!--Policy--> | ||
Latest revision as of 17:05, 27 May 2022
Description
The IBDNe program estimates the historical effective population size of a homogenous population. The input for the IBDNe program is the set of identity-by-descent (IBD) segments detected by the IBDseq program.
Environment Modules
Run module spider ibdne to find out what environment modules are available for this application.
System Variables
- HPC_IBDNE_DIR - installation directory
- HPC_IBDNE_BIN - executable directory
Citation
If you publish research that uses ibdne you have to cite it as follows: