Difference between revisions of "Ibdne"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | S R Browning and B L Browning (2015) | + | [http://www.cell.com/ajhg/abstract/S0002-9297(15)00288-8 S R Browning and B L Browning (2015) Accurate non-parametric estimation of recent effective population size from segments of identity by descent. American Journal of Human Genetics. In Press. doi:10.1016/j.ajhg.2015.07.012] |
|}} | |}} | ||
Latest revision as of 17:05, 27 May 2022
Description
The IBDNe program estimates the historical effective population size of a homogenous population. The input for the IBDNe program is the set of identity-by-descent (IBD) segments detected by the IBDseq program.
Environment Modules
Run module spider ibdne to find out what environment modules are available for this application.
System Variables
- HPC_IBDNE_DIR - installation directory
- HPC_IBDNE_BIN - executable directory
Citation
If you publish research that uses ibdne you have to cite it as follows: