Difference between revisions of "CellRanger"
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Revision as of 19:20, 23 May 2022
Description
Cell Ranger is a set of analysis pipelines that process Chromium single cell 3’ RNA-seq output to align reads, generate gene-cell matrices and perform clustering and gene expression analysis.
Environment Modules
Run module spider CellRanger to find out what environment modules are available for this application.
System Variables
- HPC_CELLRANGER_DIR - installation directory