Difference between revisions of "Deepbgc"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|deepbgc}} |{{#vardefine:url|https://github.com/Merck/deepbgc}} <!--CONFIGURA...") |
|||
| (2 intermediate revisions by the same user not shown) | |||
| Line 26: | Line 26: | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | * DEEPBGC_DATA - data directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 20:11, 29 September 2020
Description
DeepBGC detects BGCs in bacterial and fungal genomes using deep learning. DeepBGC employs a Bidirectional Long Short-Term Memory Recurrent Neural Network and a word2vec-like vector embedding of Pfam protein domains. Product class and activity of detected BGCs is predicted using a Random Forest classifier.
Environment Modules
Run module spider deepbgc to find out what environment modules are available for this application.
System Variables
- HPC_DEEPBGC_DIR - installation directory
- HPC_DEEPBGC_BIN - executable directory
- DEEPBGC_DATA - data directory