Difference between revisions of "RepeatAnalysis"
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(Created page with "Category:SoftwareCategory:biologyCategory:phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|repeatanalysis}} |{{#vardefine:url|REPLACE}} <!--CONFIGU...") |
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|repeatanalysis}} | |{{#vardefine:app|repeatanalysis}} | ||
| − | |{{#vardefine:url| | + | |{{#vardefine:url|https://github.com/PacificBiosciences/apps-scripts/tree/master/RepeatAnalysisTools}} |
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:34, 26 August 2020
Description
PacBio tools: RepeatAnalysis, AmpFreeTools, Lima
Environment Modules
Run module spider repeatanalysis to find out what environment modules are available for this application.
System Variables
- HPC_REPEATANALYSIS_DIR - installation directory