Difference between revisions of "TriMetAss"
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Revision as of 21:29, 6 December 2019
Description
TriMetAss is an extension to the Trinity software [1], which can assemble select regions surrounding interesting features in metagenomic data. The software is particularly useful for very common and well-conserved genes (and – in theory – non-coding regions) that can occur in multiple contexts in the microbial community under study. It uses Vmatch [2] to extend seed reads (or contigs generated by another assembler) into longer contigs, by iteratively calling Vmatch and Trinity, until some stop criteria are met.
Required Modules
Serial
- trimetass
System Variables
- HPC_TRIMETASS_DIR - installation directory
Citation
If you publish research that uses trimetass you have to cite it as follows: