Difference between revisions of "Vt"
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(Created page with "Category:SoftwareCategory:biologyCategory:genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|vt}} |{{#vardefine:url|https://genome.sph.umich.edu/wiki/Vt}}...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:29, 6 December 2019
Description
vt is a variant tool set that discovers short variants from Next Generation Sequencing data.
Environment Modules
Run module spider vt to find out what environment modules are available for this application.
System Variables
- HPC_VT_DIR - installation directory
- HPC_VT_BIN - executable directory
Citation
If you publish research that uses vt you have to cite it as follows:
Adrian Tan, Gonçalo R. Abecasis and Hyun Min Kang. Unified Representation of Genetic Variants. Bioinformatics (2015) 31(13): 2202-2204