Difference between revisions of "WhatsHap"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:29, 6 December 2019
Description
WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-based phasing or haplotype assembly. It is especially suitable for long reads, but works also well with short reads.
Environment Modules
Run module spider whatshap to find out what environment modules are available for this application.
System Variables
- HPC_WHATSHAP_DIR - installation directory
Citation
If you publish research that uses whatshap you have to cite it as follows:
https://whatshap.readthedocs.io/en/latest/howtocite.html