Difference between revisions of "WOMBAT"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|REPLACE}} |{{#vardefine:url|REPLACE}} <!--CONFIGURATION:...") |
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[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] | [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
| − | |{{#vardefine:app| | + | |{{#vardefine:app|wombat}} |
| − | |{{#vardefine:url| | + | |{{#vardefine:url|http://didgeridoo.une.edu.au/km/wmbdownload1.php}} |
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:29, 6 December 2019
Description
WOMBAT is a program to facilitate analyses fitting a linear, mixed model via restricted maximum likelihood (REML). It is assumed that traits analysed are continuous and have a multivariate normal distribution. WOMBAT is set up with quantitative genetic analyses in mind, but is readily applicable in other areas. Its main purpose is the estimation of (co)variance components and the resulting genetic parameters. It is particularly suited to analyses of moderately large to large data sets from livestock improvement programmes, fitting relatively simple models.
Environment Modules
Run module spider wombat to find out what environment modules are available for this application.
System Variables
- HPC_WOMBAT_DIR - installation directory
- HPC_WOMBAT_BIN - executable directory