WoLFPSort: Difference between revisions
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Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|wolfpsort}} |{{#vardefine:url|https://github.com/fmaguire/WoLFPSort}} <!--CO..." |
Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
WoLF PSORT is an extension of the PSORT II program for protein subcellular localization prediction, which is based on the PSORT principle. WoLF PSORT converts a protein's amino acid sequences into numerical localization features; based on sorting signals, amino acid composition and functional motifs. After conversion, a simple k-nearest neighbor classifier is used for prediction | |||
<!--Modules--> | <!--Modules--> | ||
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:29, 6 December 2019
Description
WoLF PSORT is an extension of the PSORT II program for protein subcellular localization prediction, which is based on the PSORT principle. WoLF PSORT converts a protein's amino acid sequences into numerical localization features; based on sorting signals, amino acid composition and functional motifs. After conversion, a simple k-nearest neighbor classifier is used for prediction
Environment Modules
Run module spider wolfpsort to find out what environment modules are available for this application.
System Variables
- HPC_WOLFPSORT_DIR - installation directory
- HPC_WOLFPSORT_BIN - executable directory
Citation
If you publish research that uses wolfpsort you have to cite it as follows:
"Protein Subcellular Localization Prediction with WoLF PSORT", Paul Horton, Keun-Joon Park, Takeshi Obayashi, and Kenta Nakai, Asian Pacific Bioinformatics Conference, APCB2006.