Difference between revisions of "Starseqr"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|starseqr}} |{{#vardefine:url|https://github.com/ExpressionAnalysis/STAR-SEQR...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| Line 26: | Line 26: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:24, 6 December 2019
Description
RNA Fusion Detection and Quantification using STAR.
Post-alignment run times are typically <20 minutes using 4 threads. Development is still ongoing and several features are currently in the works. DNA breakpoint detection is still experimental.
Environment Modules
Run module spider starseqr to find out what environment modules are available for this application.
System Variables
- HPC_STARSEQR_DIR - installation directory
- HPC_STARSEQR_BIN - executable directory