Difference between revisions of "STAR-Fusion"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:24, 6 December 2019
Description
STAR-Fusion is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads. STAR-Fusion further processes the output generated by the STAR aligner to map junction reads and spanning reads to a reference annotation set.
Required Modules
Serial
- gcc/5.2.0
- star-fusion
System Variables
- HPC_STAR-FUSION_DIR - installation directory
Citation
If you publish research that uses star-fusion you have to cite it as follows:
A STAR-Fusion manuscript preprint is now available on bioRxiv