Difference between revisions of "SiLiX"
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Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_MAN - manual directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:24, 6 December 2019
Description
The software package SiLiX (SIngle LInkage Clustering of Sequences) implements a new algorithm for the clustering of homologous sequences, based on single transitive links (single linkage) with alignment coverage constraints.
Environment Modules
Run module spider silix to find out what environment modules are available for this application.
System Variables
- HPC_SILIX_DIR - installation directory
- HPC_SILIX_BIN - executable directory
- HPC_SILIX_MAN - manual directory
Citation
If you publish research that uses silix you have to cite it as follows:
Miele V, Penel S, Duret L. BMC Bioinformatics. 2011 Apr 22;12:116. doi: 10.1186/1471-2105-12-116.