Difference between revisions of "SiLiX"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|silix}} |{{#vardefine:url|http://www.mybiosoftware.com/silix-1-2-8-ultra-fas...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| (2 intermediate revisions by one other user not shown) | |||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_MAN - manual directory |
<!--Configuration--> | <!--Configuration--> | ||
| Line 35: | Line 35: | ||
{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
| − | + | ||
|}} | |}} | ||
| Line 61: | Line 61: | ||
If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | [https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-12-116 Miele V, Penel S, Duret L. BMC Bioinformatics. 2011 Apr 22;12:116. doi: 10.1186/1471-2105-12-116.] | |
|}} | |}} | ||
Latest revision as of 21:24, 6 December 2019
Description
The software package SiLiX (SIngle LInkage Clustering of Sequences) implements a new algorithm for the clustering of homologous sequences, based on single transitive links (single linkage) with alignment coverage constraints.
Environment Modules
Run module spider silix to find out what environment modules are available for this application.
System Variables
- HPC_SILIX_DIR - installation directory
- HPC_SILIX_BIN - executable directory
- HPC_SILIX_MAN - manual directory
Citation
If you publish research that uses silix you have to cite it as follows:
Miele V, Penel S, Duret L. BMC Bioinformatics. 2011 Apr 22;12:116. doi: 10.1186/1471-2105-12-116.