Difference between revisions of "Stringtie"
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Revision as of 21:24, 6 December 2019
Description
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. It is primarily a genome-guided transcriptome assembler, although it can borrow algorithmic techniques from de novo genome assembly to help with transcript assembly. Its input can include not only the spliced read alignments used by reference-based assemblers, but also longer contigs that were assembled de novo from unambiguous, non-branching parts of a transcript.
Required Modules
Serial
- stringtie
System Variables
- HPC_STRINGTIE_DIR
Validation
- Validated 4/5/2018