Difference between revisions of "Scipion"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Image Processing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|scipion}} |{{#vardefine:url|https://github.com/I2PC/scipion}} <!--CONFIGU...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:24, 6 December 2019
Description
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on.
Environment Modules
Run module spider scipion to find out what environment modules are available for this application.
System Variables
- HPC_SCIPION_DIR - installation directory