Difference between revisions of "ProtExcluder"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:22, 6 December 2019
Description
ProtExcluder is designed to exclude the portion of DNA sequence (as well as certain length of the flanking sequence – given by the user, default = 50 bp) matching subjects in a protein database.
Environment Modules
Run module spider protexcluder to find out what environment modules are available for this application.
System Variables
- HPC_PROTEXCLUDER_DIR - installation directory
- HPC_PROTEXCLUDER_BIN - executable directory
Citation
If you publish research that uses protexcluder you have to cite it as follows:
Campbell, M. S., Law, M., Holt, C., Stein, J. C., Moghe, G. D., Hunagel, D. E., Lei, J., Achawanantakun, R., Jiao, D., Lawrence, C. J., Ware, D., Shiu, S-H., Childs, K. L., Sun, Y., Jiang, N, Yandell, M. 2014. MAKER-P: a tool-kit for the rapid creation, management, and quality control of plant genome annotations. Plant Physiology 164 513-524.