OCOCO: Difference between revisions
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Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ococo}} |{{#vardefine:url|https://github.com/karel-brind..." |
Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_SCP - scripts directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_EXE - exampledirectory | ||
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:22, 6 December 2019
Description
OCOCO: the first online consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
Environment Modules
Run module spider ococo to find out what environment modules are available for this application.
System Variables
- HPC_OCOCO_DIR - installation directory
- HPC_OCOCO_BIN - executable directory
- HPC_OCOCO_SCP - scripts directory
- HPC_OCOCO_EXE - exampledirectory
Citation
If you publish research that uses ococo you have to cite it as follows:
K. Brinda, V. Boeva, G. Kucherov. Ococo: an online consensus caller. arXiv:1712.01146 [q-bio.GN, 2017]