Difference between revisions of "MEGA"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| Line 25: | Line 25: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - examples directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:22, 6 December 2019
Description
mega website
Molecular Evolutionary Genetics Analysis
Software suite for analyzing DNA and protein sequence data from species and populations.
Environment Modules
Run module spider mega to find out what environment modules are available for this application.
System Variables
- HPC_MEGA_DIR - installation directory
- HPC_MEGA_BIN - executable directory
- HPC_MEGA_DOC - documentation directory
- HPC_MEGA_EXE - examples directory
Additional Information
Starting with MEGA7-7.0.25 MEGA requires X11. To execute it in headless environment on HiPerGator use Xvfb by placing the following code into your job script above the mega call:
DISPLAY_ID=$RANDOM
export DISPLAY=:${DISPLAY_ID}
Xvfb :${DISPLAY_ID} -screen 0 1024x768x16 &
Citation
If you publish research that uses mega you have to cite it as follows:
- Citation for MEGA 7
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for bigger datasets. Kumar S, Stecher G, and Tamura K (2016) Molecular Biology and Evolution 33(7):1870-1874.