Difference between revisions of "Methylpy"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|methylpy}} |{{#vardefine:url|https://github.com/yupenghe...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:21, 6 December 2019
Description
Methylpy, a pyhton-based analysis pipeline for
(single-cell) (whole-genome) bisulfite sequencing data (single-cell) NOMe-seq data differential methylation analysis
Environment Modules
Run module spider methylpy to find out what environment modules are available for this application.
System Variables
- HPC_METHYLPY_DIR - installation directory
- HPC_METHYLPY_BIN - executable directory
Citation
If you publish research that uses methylpy you have to cite it as follows: