Difference between revisions of "LFMM"
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Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executalbe directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - example directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:21, 6 December 2019
Description
The LFMM computer program includes an integrated framework based on population genetics, ecological modeling and statistical techniques for screening genomes for signatures of local adaptation.
It implements fast algorithms using latent factor mixed models based on a variant of Bayesian principal component analysis in which residual population structure is introduced via unobserved factors.
Required Modules
Serial
- lfmm
System Variables
- HPC_LFMM_DIR - installation directory
- HPC_LFMM_BIN - executalbe directory
- HPC_LFMM_EXE - example directory
Citation
If you publish research that uses lfmm you have to cite it as follows: