Difference between revisions of "InterProScan"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Moskalenko moved page Iprscan to InterProScan: module whatis rename) |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| Line 30: | Line 30: | ||
<!--Add additional HPC_FOO_BIN and other ENV VARIABLES below--> | <!--Add additional HPC_FOO_BIN and other ENV VARIABLES below--> | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Run--> | <!--Run--> | ||
Revision as of 21:21, 6 December 2019
Description
This interproscan software allows you to query your sequence against the InterPro databases.
Required Modules
Serial
- iprscan
System Variables
- HPC_IPRSCAN_DIR - installation directory
How To Run
Interproscan 5 series is run differently from the "4.x" series. See https://code.google.com/p/interproscan/wiki/i5RC6HowToRun for details or load the module and run "interproscan.sh". To set the amount of memory Interproscan can use set the "_JAVA_OPTIONS" variable to a value different from the default 2048M, e.g. '$ export _JAVA_OPTIONS="-Xmx8192M"'