Difference between revisions of "MIGRATE-N"
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(Created page with "Category:SoftwareCategory:biologyCategory:bioinformaticsCategory:population genetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|migraten}} |{{#vardefin...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_MAN - manual directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:21, 6 December 2019
Description
Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes. Migrate uses maximum likelihood or Bayesian inference to jointly estimate all parameters.
Environment Modules
Run module spider migraten to find out what environment modules are available for this application.
System Variables
- HPC_MIGRATEN_DIR - installation directory
- HPC_MIGRATEN_BIN - executable directory
- HPC_MIGRATEN_MAN - manual directory