Difference between revisions of "DASTool"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - example directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:21, 6 December 2019
Description
The DAS Tool approach to solve the binning problem is to integrate predictions from multiple established binning tools. The number and type of binning tools is flexible. Candidate bins are generated independently when all binning tools are applied to the same assembly.
Environment Modules
Run module spider dastool to find out what environment modules are available for this application.
System Variables
- HPC_DASTOOL_DIR - installation directory
- HPC_DASTOOL_BIN - executable directory
- HPC_DASTOOL_DOC - documentation directory
- HPC_DASTOOL_EXE - example directory
Citation
If you publish research that uses dastool you have to cite it as follows:
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy