Difference between revisions of "FastML"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
|||
| Line 33: | Line 33: | ||
--> | --> | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:20, 6 December 2019
Description
FastML is a tool for the reconstruction of ancestral sequences based on the phylogenetic relations between homologous sequences. It runs algorithms that reconstruct the ancestral sequences with emphasis on an accurate reconstruction of both indels and characters. The results are the most probable sequences, together with posterior probabilities for each character and indel at each sequence position for each internal node of the tree. FastML is generic and is applicable for any type of molecular sequences (nucleotide, protein, or codon sequences).
Required Modules
Serial
- fastml
System Variables
- HPC_FASTML_DIR
Validation
- Validated 4/5/2018