Difference between revisions of "CRISPRCasFinder"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|crisprcasfinder}} |{{#vardefine:url|https://crisprcas.i2bc.paris-saclay.fr/H...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:11, 6 December 2019
Description
The CRISPRCasFinder program enables the easy detection of CRISPRs and cas genes. This is an update of the CRISPRFinder program with improved specificity and indication on the CRISPR orientation. MacSyFinder is used to identify cas genes, the CRISPR-Cas type and subtype.
Environment Modules
Run module spider crisprcasfinder to find out what environment modules are available for this application.
System Variables
- HPC_CRISPRCASFINDER_DIR - installation directory
- HPC_CRISPRCASFINDER_BIN - executable directory
- HPC_CRISPRCASFINDER_DOC - documentation directory