Difference between revisions of "CNVkit"
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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|cnvkit}} |{{#vardefine:url|https://github.com/etal/cnvkit}} <!--CONFIGURATION: OPTIONAL (|1}} means it...") |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:06, 6 December 2019
Description
A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing.
Required Modules
Serial
- gcc/5.2.0
- cnvkit
System Variables
- HPC_CNVKIT_DIR - installation directory
- HPC_CNVKIT_BIN - executable directory