Difference between revisions of "WoLFPSort"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|wolfpsort}} |{{#vardefine:url|https://github.com/fmaguire/WoLFPSort}} <!--CO...") |
|||
| Line 18: | Line 18: | ||
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | + | WoLF PSORT is an extension of the PSORT II program for protein subcellular localization prediction, which is based on the PSORT principle. WoLF PSORT converts a protein's amino acid sequences into numerical localization features; based on sorting signals, amino acid composition and functional motifs. After conversion, a simple k-nearest neighbor classifier is used for prediction | |
<!--Modules--> | <!--Modules--> | ||
Revision as of 17:00, 14 August 2019
Description
WoLF PSORT is an extension of the PSORT II program for protein subcellular localization prediction, which is based on the PSORT principle. WoLF PSORT converts a protein's amino acid sequences into numerical localization features; based on sorting signals, amino acid composition and functional motifs. After conversion, a simple k-nearest neighbor classifier is used for prediction
Environment Modules
Run module spider wolfpsort to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:wolfpsort}}_DIR - installation directory
Citation
If you publish research that uses wolfpsort you have to cite it as follows:
"Protein Subcellular Localization Prediction with WoLF PSORT", Paul Horton, Keun-Joon Park, Takeshi Obayashi, and Kenta Nakai, Asian Pacific Bioinformatics Conference, APCB2006.