Difference between revisions of "FastUniq"
Jump to navigation
Jump to search
(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|REPLACE}} |{{#vardefine:url|REPLACE}} <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> |{{#vardefin...") |
Moskalenko (talk | contribs) |
||
| Line 1: | Line 1: | ||
[[Category:Software]] | [[Category:Software]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
| − | |{{#vardefine:app| | + | |{{#vardefine:app|FastUniq}} |
| − | |{{#vardefine:url| | + | |{{#vardefine:url|https://sourceforge.net/projects/fastuniq/}} |
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
Revision as of 15:16, 24 July 2018
Description
FastUniq as an ultrafast de novo tool for removal of duplicates in paired short DNA sequence reads in FASTQ format. FastUniq identifies duplicates by comparing sequences between read pairs and does not require complete genome sequences as prerequisites. FastUniq is capable of simultaneously handling reads with different lengths and results in highly efficient running time.
Environment Modules
Run module spider FastUniq to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:FastUniq}}_DIR - installation directory
- HPC_{{#uppercase:FastUniq}}_BIN - executable directory
- HPC_{{#uppercase:FastUniq}}_EXE - example directory