Difference between revisions of "REAPR"
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Revision as of 18:37, 7 July 2017
Description
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be used in any stage of an assembly pipeline to automatically break incorrect scaffolds and flag other errors in an assembly for manual inspection. It reports mis-assemblies and other warnings, and produces a new broken assembly based on the error calls.
Required Modules
Serial
- reapr
System Variables
- HPC_{{#uppercase:reapr}}_DIR - installation directory
Citation
If you publish research that uses reapr you have to cite it as follows: