Difference between revisions of "Crass"

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[[Category:Software]][[Category:Biology]][[Category:Assembly]]
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[[Category:Software]][[Category:Biology]][[Category:NGS]]
 
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{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|crass}}
 
|{{#vardefine:app|crass}}

Revision as of 18:35, 7 July 2017

Description

crass website  

Crass is a program that searches through raw metagenomic reads for Clustered Regularly Interspersed Short Palindromic Repeats

Required Modules

Serial

  • gcc/5.2.0
  • crass

System Variables

  • HPC_{{#uppercase:crass}}_DIR - installation directory
  • HPC_{{#uppercase:crass}}_BIN - executable directory
  • HPC_{{#uppercase:crass}}_DOC - documentation directory
  • HPC_{{#uppercase:crass}}_MAN - manual directory





Citation

If you publish research that uses crass you have to cite it as follows:

Connor T. Skennerton, Michael Imelfort, and Gene W. Tyson Crass: identification and reconstruction of CRISPR from unassembled metagenomic data Nucl. Acids Res. (2013) 41(10): e105