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| affy Methods for Affymetrix Oligonucleotide Arrays
| | [[Category:Software]] |
| affydata Affymetrix Data for Demonstration Purpose
| | {{#get_file_data:file=R_PACKAGES |
| affyio Tools for parsing Affymetrix data files
| | |data=name=Package,description=Title |
| affyPLM Methods for fitting probe-level models
| | |format=CSV with header |
| affyQCReport QC Report Generation for affyBatch objects
| | |cache seconds=3600 |
| akima Interpolation of irregularly spaced data
| | }} |
| annaffy Annotation tools for Affymetrix biological
| | {| class="wikitable" |
| metadata
| | ! Name |
| annotate Annotation for microarrays
| | ! Description {{#for_external_table:<nowiki/> |
| AnnotationDbi Annotation Database Interface
| | {{!}}- |
| ape Analyses of Phylogenetics and Evolution
| | {{!}} {{{name}}} |
| base The R Base Package
| | {{!}} {{{description}}}}} |
| baySeq Empirical Bayesian analysis of patterns of
| | |} |
| differential expression in count data
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| Biobase Biobase: Base functions for Bioconductor
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| BiocGenerics Generic functions for Bioconductor
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| BiocInstaller Install/Update Bioconductor and CRAN Packages
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| Biostrings String objects representing biological
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| sequences, and matching algorithms
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| bitops Functions for Bitwise operations
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| boot Bootstrap Functions (originally by Angelo Canty
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| for S)
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| caTools Tools: moving window statistics, GIF, Base64,
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| ROC AUC, etc.
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| class Functions for Classification
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| cluster Cluster Analysis Extended Rousseeuw et al.
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| CNVtools A package to test genetic association with CNV
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| data
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| codetools Code Analysis Tools for R
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| colorspace Color Space Manipulation
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| compiler The R Compiler Package
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| datasets The R Datasets Package
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| DBI R Database Interface
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| DESeq Differential gene expression analysis based on
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| the negative binomial distribution
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| dichromat Color schemes for dichromats
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| digest Create cryptographic hash digests of R objects
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| doMC Foreach parallel adaptor for the multicore
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| package
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| doSNOW Foreach parallel adaptor for the snow package
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| DynDoc Dynamic document tools
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| edgeR Empirical analysis of digital gene expression
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| data in R
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| foreach Foreach looping construct for R
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| foreign Read Data Stored by Minitab, S, SAS, SPSS,
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| Stata, Systat, dBase, ...
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| gcrma Background Adjustment Using Sequence
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| Information
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| gdata Various R programming tools for data
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| manipulation
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| gee Generalized Estimation Equation solver
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| geiger Analysis of evolutionary diversification
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| genefilter genefilter: methods for filtering genes from
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| microarray experiments
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| geneplotter Graphics related functions for Bioconductor
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| GenomicRanges Representation and manipulation of genomic
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| intervals
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| ggplot2 An implementation of the Grammar of Graphics
| |
File R_PACKAGES is missing.