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| <pre>
| | [[Category:Software]] |
| a4Base Automated Affymetrix Array Analysis Base Package
| | {{#get_file_data:file=R_PACKAGES |
| a4Classif Automated Affymetrix Array Analysis Classification Package
| | |data=name=Package,description=Title |
| a4Core Automated Affymetrix Array Analysis Core Package
| | |format=CSV with header |
| a4Preproc Automated Affymetrix Array Analysis Preprocessing Package
| | |cache seconds=3600 |
| a4Reporting Automated Affymetrix Array Analysis Reporting Package
| | }} |
| abind Combine multi-dimensional arrays
| | {| class="wikitable" |
| aCGH Classes and functions for Array Comparative Genomic Hybridization data.
| | ! Name |
| actuar Actuarial functions
| | ! Description {{#for_external_table:<nowiki/> |
| ade4 Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences
| | {{!}}- |
| afex Analysis of Factorial Experiments
| | {{!}} {{{name}}} |
| affxparser Affymetrix File Parsing SDK
| | {{!}} {{{description}}}}} |
| affy Methods for Affymetrix Oligonucleotide Arrays
| | |} |
| affydata Affymetrix Data for Demonstration Purpose
| |
| affyio Tools for parsing Affymetrix data files
| |
| affyPLM Methods for fitting probe-level models
| |
| affyQCReport QC Report Generation for affyBatch objects
| |
| AGDEX Agreement of Differential Expression Analysis
| |
| Agi4x44PreProcess PreProcessing of Agilent 4x44 array data
| |
| agricolae Statistical Procedures for Agricultural Research
| |
| akima Interpolation of irregularly spaced data
| |
| annaffy Annotation tools for Affymetrix biological metadata
| |
| annotate Annotation for microarrays
| |
| AnnotationDbi Annotation Database Interface
| |
| AnnotationForge Code for Building Annotation Database Packages
| |
| ape Analyses of Phylogenetics and Evolution
| |
| aplpack Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some
| |
| slider functions
| |
| aroma.affymetrix Analysis of large Affymetrix microarray data sets
| |
| aroma.apd A probe-level data file format used by aroma.affymetrix [DEPRECATED]
| |
| aroma.core Core methods and classes used by aroma.* packages part of The Aroma Framework
| |
| aroma.light Light-weight methods for normalization and visualization of microarray data using only
| |
| basic R data types
| |
| arrayQualityMetrics Quality metrics on microarray data sets
| |
| aster Aster Models
| |
| automap Automatic interpolation package
| |
| aws Adaptive Weights Smoothing
| |
| awsMethods Class and Methods definitions for packages aws, adimpro, fmri, dwi
| |
| BAMD Bayesian Association Model for Genomic Data with Missing Covariates
| |
| base The R Base Package
| |
| base64 Base 64 encoder/decoder
| |
| base64enc Tools for base64 encoding
| |
| batchmeans Consistent Batch Means Estimation of Monte Carlo Standard Errors
| |
| batman Bayesian AuTomated Metabolite Analyser for NMR spectra
| |
| BayesLogit Logistic Regression
| |
| baySeq Empirical Bayesian analysis of patterns of differential expression in count data
| |
| bdsmatrix Routines for Block Diagonal Symmetric matrices
| |
| beadarray Quality assessment and low-level analysis for Illumina BeadArray data
| |
| BeadDataPackR Compression of Illumina BeadArray data
| |
| Benchmarking Benchmark and frontier analysis using DEA and SFA
| |
| binom Binomial Confidence Intervals For Several Parameterizations
| |
| Biobase Biobase: Base functions for Bioconductor
| |
| BiocGenerics Generic functions for Bioconductor
| |
| BiocInstaller Install/Update Bioconductor and CRAN Packages
| |
| biom An interface package (beta) for the BIOM file format.
| |
| biomaRt Interface to BioMart databases (e.g. Ensembl, COSMIC ,Wormbase and Gramene)
| |
| biomod2 Ensemble platform for species distribution modeling
| |
| Biostrings String objects representing biological sequences, and matching algorithms
| |
| biovizBase Basic graphic utilities for visualization of genomic data.
| |
| bit A class for vectors of 1-bit booleans
| |
| bitops Bitwise Operations
| |
| boot Bootstrap Functions (originally by Angelo Canty for S)
| |
| BSgenome Infrastructure for Biostrings-based genome data packages
| |
| BSgenome.Hsapiens.UCSC.hg19 Homo sapiens (Human) full genome (UCSC version hg19)
| |
| Cairo R graphics device using cairo graphics library for creating high-quality bitmap (PNG,
| |
| JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output.
| |
| CAMERA Collection of annotation related methods for mass spectrometry data
| |
| car Companion to Applied Regression
| |
| Category Category Analysis
| |
| caTools Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
| |
| CCA Canonical correlation analysis
| |
| cghFLasso Detecting hot spot on CGH array data with fused lasso regression.
| |
| chron Chronological objects which can handle dates and times
| |
| Ckmeans.1d.dp Optimal distance-based clustering for one-dimensional data
| |
| class Functions for Classification
| |
| cluster Cluster Analysis Extended Rousseeuw et al.
| |
| CNVtools A package to test genetic association with CNV data
| |
| coda Output analysis and diagnostics for MCMC
| |
| codetools Code Analysis Tools for R
| |
| coin Conditional Inference Procedures in a Permutation Test Framework
| |
| colorspace Color Space Manipulation
| |
| combinat combinatorics utilities
| |
| compiler The R Compiler Package
| |
| CompQuadForm Distribution function of quadratic forms in normal variables
| |
| corpcor Efficient Estimation of Covariance and (Partial) Correlation
| |
| coxme Mixed Effects Cox Models.
| |
| crlmm Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and
| |
| Illumina arrays.
| |
| cummeRbund Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput
| |
| sequencing data.
| |
| datasets The R Datasets Package
| |
| data.table Extension of data.frame
| |
| DBI R Database Interface
| |
| deldir Delaunay Triangulation and Dirichlet (Voronoi) Tessellation.
| |
| DESeq Differential gene expression analysis based on the negative binomial distribution
| |
| DESeq2 Differential gene expression analysis based on the negative binomial distribution
| |
| deSolve General Solvers for Initial Value Problems of Ordinary Differential Equations (ODE),
| |
| Partial Differential Equations (PDE), Differential Algebraic Equations (DAE), and Delay
| |
| Differential Equations (DDE)
| |
| DEXSeq Inference of differential exon usage in RNA-Seq
| |
| dichromat Color Schemes for Dichromats
| |
| digest Create cryptographic hash digests of R objects
| |
| dismo Species distribution modeling
| |
| diversitree diversitree: comparative phylogenetic analyses of diversification
| |
| DNAcopy DNA copy number data analysis
| |
| doMC Foreach parallel adaptor for the multicore package
| |
| doParallel Foreach parallel adaptor for the parallel package
| |
| doSNOW Foreach parallel adaptor for the snow package
| |
| dynamicTreeCut Methods for detection of clusters in hierarchical clustering dendrograms.
| |
| DynDoc Dynamic document tools
| |
| e1071 Misc Functions of the Department of Statistics (e1071), TU Wien
| |
| edgeR Empirical analysis of digital gene expression data in R
| |
| effects Effect Displays for Linear, Generalized Linear, Multinomial-Logit, Proportional-Odds
| |
| Logit Models and Mixed-Effects Models
| |
| ellipse Functions for drawing ellipses and ellipse-like confidence regions
| |
| expm Matrix exponential
| |
| FactoMineR Multivariate Exploratory Data Analysis and Data Mining with R
| |
| fastcluster Fast hierarchical clustering routines for R and Python
| |
| fastmatch Fast match() function
| |
| fda Functional Data Analysis
| |
| fdrtool Estimation of (Local) False Discovery Rates and Higher Criticism
| |
| ff memory-efficient storage of large data on disk and fast access functions
| |
| ffbase Basic statistical functions for package ff
| |
| flashClust Implementation of optimal hierarchical clustering
| |
| fields Tools for spatial data
| |
| foreach Foreach looping construct for R
| |
| foreign Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ...
| |
| Formula Extended Model Formulas
| |
| gage Generally Applicable Gene-set Enrichment for Pathway Analysis
| |
| gageData Auxillary data for gage package
| |
| gam Generalized Additive Models
| |
| gamm4 Generalized additive mixed models using mgcv and lme4
| |
| gbm Generalized Boosted Regression Models
| |
| gcrma Background Adjustment Using Sequence Information
| |
| gdata Various R programming tools for data manipulation
| |
| gee Generalized Estimation Equation solver
| |
| geiger Analysis of evolutionary diversification
| |
| GeneCycle Identification of Periodically Expressed Genes
| |
| genefilter genefilter: methods for filtering genes from microarray experiments
| |
| GeneNet Modeling and Inferring Gene Networks
| |
| geneplotter Graphics related functions for Bioconductor
| |
| GenomicFeatures Tools for making and manipulating transcript centric annotations
| |
| GenomicRanges Representation and manipulation of genomic intervals
| |
| geoR Analysis of geostatistical data
| |
| geoRglm geoRglm - a package for generalised linear spatial models
| |
| getopt C-like getopt behavior.
| |
| ggmap A package for spatial visualization with Google Maps and OpenStreetMap
| |
| ggplot2 An implementation of the Grammar of Graphics
| |
| GLAD Gain and Loss Analysis of DNA
| |
| glmmADMB Generalized Linear Mixed Models using AD Model Builder
| |
| glmnet Lasso and elastic-net regularized generalized linear models
| |
| gmm Generalized Method of Moments and Generalized Empirical Likelihood
| |
| gmodels Various R programming tools for model fitting
| |
| GO.db A set of annotation maps describing the entire Gene Ontology
| |
| GOstats Tools for manipulating GO and microarrays.
| |
| gplots Various R programming tools for plotting data
| |
| GPseq gpseq: Using the generalized Poisson distribution to model sequence read counts from high
| |
| throughput sequencing experiments
| |
| graph graph: A package to handle graph data structures
| |
| graphics The R Graphics Package
| |
| grDevices The R Graphics Devices and Support for Colours and Fonts
| |
| gregmisc Greg's Miscellaneous Functions
| |
| grid The Grid Graphics Package
| |
| gridExtra functions in Grid graphics
| |
| grofit The package was developed to fit fit many growth curves obtained under different
| |
| conditions.
| |
| GSA Gene set analysis
| |
| gsalib Utility functions for GATK
| |
| GSEABase Gene set enrichment data structures and methods
| |
| gsl wrapper for the Gnu Scientific Library
| |
| gstat spatial and spatio-temporal geostatistical modelling, prediction and simulation
| |
| gsubfn Utilities for strings and function arguments.
| |
| gtable Arrange grobs in tables.
| |
| gtools Various R programming tools
| |
| Gviz Plotting data and annotation information along genomic coordinates
| |
| heatmap.plus Heatmap with more sensible behavior.
| |
| hexbin Hexagonal Binning Routines
| |
| hglm Hierarchical Generalized Linear Models
| |
| hgu133plus2.db Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chip hgu133plus2)
| |
| hgu95av2.db Affymetrix Human Genome U95 Set annotation data (chip hgu95av2)
| |
| hierNet A Lasso for Hierarchical Interactions
| |
| HilbertVis Hilbert curve visualization
| |
| Hmisc Harrell Miscellaneous
| |
| HSAUR2 A Handbook of Statistical Analyses Using R (2nd Edition)
| |
| httr Tools for working with URLs and HTTP
| |
| hwriter HTML Writer - Outputs R objects in HTML format
| |
| hydroGOF Goodness-of-fit functions for comparison of simulated and observed hydrological time
| |
| series
| |
| hydroTSM Time series management, analysis and interpolation for hydrological modelling
| |
| igraph Network analysis and visualization
| |
| illuminaio Parsing Illumina microarray output files
| |
| impute impute: Imputation for microarray data
| |
| INLA Functions which allow to perform full Bayesian analysis of latent Gaussian models using
| |
| Integrated Nested Laplace Approximaxion
| |
| inline Inline C, C++, Fortran function calls from R
| |
| intervals Tools for working with points and intervals
| |
| IRanges Infrastructure for manipulating intervals on sequences
| |
| iterators Iterator construct for R
| |
| itertools Iterator Tools
| |
| jpeg Read and write JPEG images
| |
| KEGG.db A set of annotation maps for KEGG
| |
| KEGGgraph KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
| |
| KEGGREST Client-side REST access to KEGG
| |
| KernSmooth Functions for kernel smoothing for Wand & Jones (1995)
| |
| KFAS Kalman Filter and Smoother for Exponential Family State Space Models.
| |
| ks Kernel smoothing
| |
| labeling Axis Labeling
| |
| lars Least Angle Regression, Lasso and Forward Stagewise
| |
| laser Likelihood Analysis of Speciation/Extinction Rates from Phylogenies
| |
| lattice Lattice Graphics
| |
| latticeExtra Extra Graphical Utilities Based on Lattice
| |
| leaps regression subset selection
| |
| LearnBayes Functions for Learning Bayesian Inference
| |
| limma Linear Models for Microarray Data
| |
| lme4 Linear mixed-effects models using Eigen and S4
| |
| lmtest Testing Linear Regression Models
| |
| locfit Local Regression, Likelihood and Density Estimation.
| |
| longitudinal Analysis of Multiple Time Course Data
| |
| LPCM Local principal curve methods
| |
| lpridge Local Polynomial (Ridge) Regression
| |
| lpSolveAPI R Interface for lp_solve version 5.5.2.0
| |
| maanova Tools for analyzing Micro Array experiments
| |
| magic create and investigate magic squares
| |
| mapdata Extra Map Databases
| |
| mapproj Map Projections
| |
| maps Draw Geographical Maps
| |
| maptools Tools for reading and handling spatial objects
| |
| marray Exploratory analysis for two-color spotted microarray data
| |
| MARSS Multivariate Autoregressive State-Space Modeling
| |
| MASS Support Functions and Datasets for Venables and Ripley's MASS
| |
| Matrix Sparse and Dense Matrix Classes and Methods
| |
| matrixcalc Collection of functions for matrix calculations
| |
| MatrixEQTL MatrixEQTL: Ultra fast eQTL analysis via large matrix operations
| |
| matrixStats Methods that apply to rows and columns of a matrix
| |
| mboost Model-Based Boosting
| |
| mclust Normal Mixture Modeling for Model-Based Clustering, Classification, and Density
| |
| Estimation
| |
| MCMCpack Markov chain Monte Carlo (MCMC) Package
| |
| mda Mixture and flexible discriminant analysis
| |
| memoise Memoise functions
| |
| methods Formal Methods and Classes
| |
| mgcv Mixed GAM Computation Vehicle with GCV/AIC/REML smoothness estimation
| |
| minqa Derivative-free optimization algorithms by quadratic approximation
| |
| misc3d Miscellaneous 3D Plots
| |
| MLInterfaces Uniform interfaces to R machine learning procedures for data in Bioconductor containers
| |
| mmap Map Pages of Memory
| |
| modeltools Tools and Classes for Statistical Models
| |
| mombf Moment and Inverse Moment Bayes factors
| |
| monomvn Estimation for multivariate normal and Student-t data with monotone missingness
| |
| mpm Multivariate Projection Methods
| |
| msdata Various Mass Spectrometry raw data example files
| |
| msm Multi-state Markov and hidden Markov models in continuous time
| |
| multcomp Simultaneous Inference in General Parametric Models
| |
| multicore Parallel processing of R code on machines with multiple cores or CPUs
| |
| multtest Resampling-based multiple hypothesis testing
| |
| munsell Munsell colour system
| |
| MVA An Introduction to Applied Multivariate Analysis with R
| |
| mvtnorm Multivariate Normal and t Distributions
| |
| mzR parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)
| |
| ncbit retrieve and build NBCI taxonomic data
| |
| ncdf Interface to Unidata netCDF data files
| |
| ncvreg Regularization paths for SCAD- and MCP-penalized regression models
| |
| ngspatial Classes for Spatial Data
| |
| nlme Linear and Nonlinear Mixed Effects Models
| |
| nnet Feed-forward Neural Networks and Multinomial Log-Linear Models
| |
| numDeriv Accurate Numerical Derivatives
| |
| oligo Preprocessing tools for oligonucleotide arrays.
| |
| oligoClasses Classes for high-throughput arrays supported by oligo and crlmm
| |
| opm Tools for analysing OmniLog(R) Phenotype Microarray data
| |
| org.Hs.eg.db Genome wide annotation for Human
| |
| optparse Command line option parser.
| |
| ouch Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
| |
| pamr Pam: prediction analysis for microarrays
| |
| parallel Support for Parallel computation in R
| |
| pathview a tool set for pathway based data integration and visualization
| |
| pbkrtest Parametric bootstrap and Kenward Roger based methods for mixed model comparison
| |
| permute Functions for generating restricted permutations of data
| |
| pheatmap Pretty Heatmaps
| |
| phia Post-Hoc Interaction Analysis
| |
| phybase Basic functions for phylogenetic analysis
| |
| phyext An extension of some of the classes in phylobase. Tree objects now support subnodes on
| |
| branches
| |
| phybase Basic functions for phylogenetic analysis
| |
| phylobase Base package for phylogenetic structures and comparative data
| |
| phyloseq Handling and analysis of high-throughput microbiome census data.
| |
| picante R tools for integrating phylogenies and ecology
| |
| pixmap Bitmap Images (``Pixel Maps'')
| |
| pkgutils pkgutils -- Utilities for creating R packages.
| |
| plier Implements the Affymetrix PLIER algorithm
| |
| plotrix Various plotting functions
| |
| pls Partial Least Squares and Principal Component regression
| |
| plyr Tools for splitting, applying and combining data
| |
| png Read and write PNG images
| |
| polyclip Polygon Clipping
| |
| pomp Statistical inference for partially observed Markov processes
| |
| preprocessCore A collection of pre-processing functions
| |
| prettyR Pretty descriptive stats.
| |
| pROC display and analyze ROC curves
| |
| proftools Profile Output Processing Tools for R
| |
| proj4 A simple interface to the PROJ.4 cartographic projections library
| |
| proto Prototype object-based programming
| |
| PSCBS Analysis of Parent-Specific DNA Copy Numbers
| |
| pscl Political Science Computational Laboratory, Stanford University
| |
| ptw Parametric Time Warping
| |
| qqman Q-Q and manhattan plots for GWAS data
| |
| quantreg Quantile Regression
| |
| qvalue Q-value estimation for false discovery rate control
| |
| R2admb ADMB to R interface functions
| |
| R2jags A Package for Running jags from R
| |
| R2WinBUGS Running WinBUGS and OpenBUGS from R / S-PLUS
| |
| RandomFields Simulation and Analysis of Random Fields
| |
| randomForest Breiman and Cutler's random forests for classification and regression
| |
| RankProd Rank Product method for identifying differentially expressed genes with application in
| |
| meta-analysis
| |
| raster raster: Geographic data analysis and modeling
| |
| rasterVis Visualization methods for the raster package
| |
| RBGL An interface to the BOOST graph library
| |
| R.cache Fast and light-weight caching (memoization) of objects and results to speed up
| |
| computations
| |
| Rcmdr R Commander
| |
| RColorBrewer ColorBrewer palettes
| |
| Rcpp Seamless R and C++ Integration
| |
| RcppArmadillo Rcpp integration for Armadillo templated linear algebra library
| |
| RcppEigen Rcpp integration for the Eigen templated linear algebra library.
| |
| RCurl General network (HTTP/FTP/...) client interface for R
| |
| rda Shrunken Centroids Regularized Discriminant Analysis
| |
| R.devices Unified handling of graphics devices
| |
| relimp Relative Contribution of Effects in a Regression Model
| |
| reshape Flexibly reshape data.
| |
| reshape2 Flexibly reshape data: a reboot of the reshape package.
| |
| R.filesets Easy handling of and access to files organized in structured directories
| |
| rgdal Bindings for the Geospatial Data Abstraction Library
| |
| rgeos Interface to Geometry Engine - Open Source (GEOS)
| |
| rgl 3D visualization device system (OpenGL)
| |
| RgoogleMaps Overlays on Google map tiles in R
| |
| Rgraphviz Provides plotting capabilities for R graph objects
| |
| R.huge Methods for accessing huge amounts of data [DEPRECATED]
| |
| rjags Bayesian graphical models using MCMC
| |
| rJava Low-level R to Java interface
| |
| rjson JSON for R
| |
| RJSONIO Serialize R objects to JSON, JavaScript Object Notation
| |
| RMark R Code for MARK Analysis
| |
| R.methodsS3 Utility function for defining S3 methods
| |
| RMySQL R interface to the MySQL database
| |
| ROCR Visualizing the performance of scoring classifiers.
| |
| R.oo R object-oriented programming with or without references
| |
| rpanel Simple interactive controls for R using the tcltk library.
| |
| rpart Recursive Partitioning and Regression Trees
| |
| rrBLUP Ridge regression and other kernels for genomic selection
| |
| R.rsp Dynamic generation of scientific reports
| |
| Rsamtools Binary alignment (BAM), variant call (BCF), or tabix file import
| |
| RSQLite SQLite interface for R
| |
| RSQLite.extfuns Math and String Extension Functions for RSQLite
| |
| Rsubread Rsubread: high-performance read alignment, quantification and mutation discovery
| |
| rtracklayer R interface to genome browsers and their annotation tracks
| |
| R.utils Various programming utilities
| |
| Rwave Time-Frequency analysis of 1-D signals
| |
| sandwich Robust Covariance Matrix Estimators
| |
| scales Scale functions for graphics.
| |
| scatterplot3d 3D Scatter Plot
| |
| sealasso Standard Error Adjusted Adaptive Lasso
| |
| sem Structural Equation Models
| |
| SemiPar Semiparametic Regression
| |
| seqMeta An R package for meta-analyzing region-based tests of rare DNA variants
| |
| setRNG Set (Normal) Random Number Generator and Seed
| |
| sfsmisc Utilities from Seminar fuer Statistik ETH Zurich
| |
| ShortRead Classes and methods for high-throughput short-read sequencing data.
| |
| siggenes Multiple testing using SAM and Efron's empirical Bayes approaches
| |
| simpleaffy Very simple high level analysis of Affymetrix data
| |
| snow Simple Network of Workstations
| |
| snowfall Easier cluster computing (based on snow).
| |
| SNPchip Visualizations for copy number alterations
| |
| sp classes and methods for spatial data
| |
| spacetime classes and methods for spatio-temporal data
| |
| spam SPArse Matrix
| |
| SparseM Sparse Linear Algebra
| |
| spatial Functions for Kriging and Point Pattern Analysis
| |
| spatial.tools R functions for working with spatial data.
| |
| spatstat Spatial Point Pattern analysis, model-fitting, simulation, tests
| |
| spBayes Univariate and Multivariate Spatial-temporal Modeling
| |
| spdep Spatial dependence: weighting schemes, statistics and models
| |
| splancs Spatial and Space-Time Point Pattern Analysis
| |
| splines Regression Spline Functions and Classes
| |
| sqldf Perform SQL Selects on R Data Frames
| |
| statmod Statistical Modeling
| |
| stats The R Stats Package
| |
| stats4 Statistical Functions using S4 Classes
| |
| stringr Make it easier to work with strings.
| |
| strucchange Testing, Monitoring, and Dating Structural Changes
| |
| subplex Subplex optimization algorithm
| |
| survival Survival Analysis
| |
| SVGAnnotation Tools for post-processing SVG plots created in R
| |
| tcltk Tcl/Tk Interface
| |
| tcltk2 Tcl/Tk Additions
| |
| tensor Tensor product of arrays
| |
| TH.data TH's Data Archive
| |
| tilingArray Transcript mapping with high-density oligonucleotide tiling arrays
| |
| tmvtnorm Truncated Multivariate Normal and Student t Distribution
| |
| tools Tools for Package Development
| |
| truncnorm Truncated normal distribution
| |
| trust Trust Region Optimization
| |
| TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TranscriptDb object(s)
| |
| ucminf General-purpose unconstrained non-linear optimization
| |
| unmarked Models for Data from Unmarked Animals
| |
| utils The R Utils Package
| |
| varSelectIP Objective Bayes Model Selection
| |
| varSelRF Variable selection using random forests
| |
| vcd Visualizing Categorical Data
| |
| vegan Community Ecology Package
| |
| VGAM Vector Generalized Linear and Additive Models
| |
| vsn Variance stabilization and calibration for microarray data
| |
| waveslim Basic wavelet routines for one-, two- and three-dimensional signal processing
| |
| wavethresh Wavelets statistics and transforms.
| |
| WGCNA Weighted Correlation Network Analysis
| |
| xcms LC/MS and GC/MS Data Analysis
| |
| XML Tools for parsing and generating XML within R and S-Plus.
| |
| xps Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole
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| Genome Arrays and Plate Arrays
| |
| xtable Export tables to LaTeX or HTML
| |
| xts eXtensible Time Series
| |
| XVector Representation and manpulation of external sequences
| |
| yaml Methods to convert R data to YAML and back
| |
| zlibbioc An R packaged zlib-1.2.5
| |
| zoo S3 Infrastructure for Regular and Irregular Time Series (Z's ordered observations)
| |
| </pre>
| |