Difference between revisions of "Varnorm"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|varnorm}} |{{#vardefine:url|https://github.com/weiyi-bit...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 14:39, 28 June 2017
Description
Normalize variants in VCF file using left-aligned normalization. Basically a wrapper around Counsyl's hgvs package.
Required Modules
Serial
- gcc/5.2.0
- varnorm
System Variables
- HPC_{{#uppercase:varnorm}}_DIR - installation directory
- HPC_{{#uppercase:varnorm}}_BIN - executable directory