Difference between revisions of "3PCLR"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|3pclr}} |{{#vardefine:url|https://github.com/FerRacimo/3P-CLR...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_DOC - documentation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_EXE - example directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 16:28, 18 May 2017
Description
3P-CLR is a method to detect positive selection in a three-population tree using patterns of linked allele frequency differentiation. It can distinguish selective events that occurred in the common ancestral population of the two most closely-related populations from those events that occurred in each of the populations after the split from each other.
Required Modules
Serial
- 3pclr
System Variables
- HPC_{{#uppercase:3pclr}}_DIR - installation directory
- HPC_{{#uppercase:3pclr}}_BIN - executable directory
- HPC_{{#uppercase:3pclr}}_DOC - documentation directory
- HPC_{{#uppercase:3pclr}}_EXE - example directory