SMC++: Difference between revisions
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 14:42, 24 February 2017
Description
SMC++ is a program for estimating the size history of populations from whole genome sequence data.
Required Modules
Serial
- gcc/5.2.0
- smcpp
System Variables
- HPC_{{#uppercase:smcpp}}_DIR - installation directory
- HPC_{{#uppercase:smcpp}}_BIN - executable directory
Citation
If you publish research that uses smcpp you have to cite it as follows:
[http://www.nature.com/ng/journal/v49/n2/abs/ng.3748.html J. Terhorst, J. A. Kamm, and Y. S. Song. Robust and scalable inference of population history from hundreds of unphased whole genomes. Nature Genetics, 49(2):303–309, 2017.]