Difference between revisions of "VAST-TOOLS"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|vast-tools}} |{{#vardefine:url|https://github.com/vastgroup...") |
Moskalenko (talk | contribs) |
||
| Line 5: | Line 5: | ||
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
| − | |{{#vardefine:exe|}} <!--ADDITIONAL INFO--> | + | |{{#vardefine:exe|1}} <!--ADDITIONAL INFO--> |
|{{#vardefine:pbs|}} <!--PBS SCRIPTS--> | |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> | ||
|{{#vardefine:policy|}} <!--POLICY--> | |{{#vardefine:policy|}} <!--POLICY--> | ||
| Line 43: | Line 43: | ||
{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
| − | + | Two VASTDB databases provided by the project have been downloaded and installed into the default location | |
| + | * Hsa (vastdb.hsa.7.3.14, human) | ||
| + | * Mmu (vastdb.mmu.7.3.14, mouse) | ||
|}} | |}} | ||
Revision as of 20:15, 3 June 2015
Description
Vertebrate Alternative Splicing and Transcription Tools (VAST-TOOLS) is a toolset for profiling alternative splicing events in RNA-Seq data.
Required Modules
Serial
- vast-tools
System Variables
- HPC_{{#uppercase:vast-tools}}_DIR - installation directory
Additional Information
Two VASTDB databases provided by the project have been downloaded and installed into the default location
- Hsa (vastdb.hsa.7.3.14, human)
- Mmu (vastdb.mmu.7.3.14, mouse)