Difference between revisions of "MOABS"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|moabs}} |{{#vardefine:url|https://code.google.com/p/moabs/}...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| − | * HPC_{{#uppercase:{{#var:app}}}}_CONF - configuration directory | + | * HPC_{{#uppercase:{{#var:app}}}}_CONF - configuration templates directory |
* HPC_{{#uppercase:{{#var:app}}}}_DATA - reference data | * HPC_{{#uppercase:{{#var:app}}}}_DATA - reference data | ||
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 03:40, 9 September 2014
Description
A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data, bisulfite sequencing or single molecule direct sequencing.
MOABS seamlessly integrates alignment, methylation calling, identification of hypomethylation for one sample and differential methylation for multiple samples, and other downstream analysis.
Required Modules
Serial
- moabs
System Variables
- HPC_{{#uppercase:moabs}}_DIR - installation directory
- HPC_{{#uppercase:moabs}}_CONF - configuration templates directory
- HPC_{{#uppercase:moabs}}_DATA - reference data