Difference between revisions of "Seqtk"

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(Created page with "Category:SoftwareCategory:BioinformaticsCategory:GenomicsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|Seqtk}} |{{#vardefine:url|https://gith...")
 
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===Serial===
 
===Serial===
* {{#var:app}}
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
 
* {{#var:app}}
 
* {{#var:app}}
 
==System Variables==
 
==System Variables==

Revision as of 14:36, 6 August 2014

Description

Seqtk website  

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.

Required Modules

Serial

  • Seqtk

System Variables

  • HPC_{{#uppercase:Seqtk}}_DIR