Difference between revisions of "InterProScan"

Revision as of 23:42, 3 June 2013

Description

iprscan website

This software allows you to query your sequence against the InterPro databases.

Required Modules

modules documentation

Serial

iprscan

System Variables

HPC_{{#uppercase:iprscan}}_DIR - installation directory

How To Run

Interproscan 5 series is run differently from the "4.x" series. See https://code.google.com/p/interproscan/wiki/i5RC6HowToRun for details or load the module and run "interproscan.sh". To set the amount of memory Interproscan can use set the "_JAVA_OPTIONS" variable to a value different from the default 2048M, e.g. '$ export _JAVA_OPTIONS="-Xmx8192M"'

@@ Line 7: / Line 7: @@
 |{{#vardefine:intel|}} <!-- "11.1" - Compiler Module Choice -->
 |{{#vardefine:mpi|}} <!-- "openmpi/1.3.4"- MPI Module Choice -->
-|{{#vardefine:exe|}} <!--RUNNING -->
+|{{#vardefine:exe|1}} <!--RUNNING -->
 |{{#vardefine:conf|}} <!--CONFIGS-->
 |{{#vardefine:pbs|}} <!--PBS SCRIPTS-->
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 {{#if: {{#var: exe}}|==How To Run==
-DOUBLE_CLICK_TO_WRITE_INSTRUCTIONS_ON_RUNNING_THE_ACTUAL_BINARY
+Interproscan 5 series is run differently from the "4.x" series. See [https://code.google.com/p/interproscan/wiki/i5RC6HowToRun https://code.google.com/p/interproscan/wiki/i5RC6HowToRun] for details or load the module and run "interproscan.sh". To set the amount of memory Interproscan can use set the "_JAVA_OPTIONS" variable to a value different from the default 2048M, e.g. '<code>$ export _JAVA_OPTIONS="-Xmx8192M"</code>'
 |}}
 <!--Configuration-->