Difference between revisions of "Hivtrace"

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[[Category:Software]][[Category:Biology]][[Category:Alignment]]
 
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{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
|{{#vardefine:app|REPLACE}}
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|{{#vardefine:app|hivtrace}}
|{{#vardefine:url|REPLACE}}
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|{{#vardefine:url|https://github.com/veg/hivtrace}}
 
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)-->
 
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)-->
 
|{{#vardefine:conf|}}          <!--CONFIGURATION-->
 
|{{#vardefine:conf|}}          <!--CONFIGURATION-->

Revision as of 19:04, 23 May 2024

Description

hivtrace website  

HIV-TRACE (TRAnsmission Cluster Engine) is an application that identifies potential transmission clusters within a supplied FASTA file.

Environment Modules

Run module spider hivtrace to find out what environment modules are available for this application.

System Variables

  • HPC_HIVTRACE_DIR - installation directory
  • HPC_HIVTRACE_BIN - executable directory

Additional Information

usage: hivtrace -h



Citation

If you publish research that uses hivtrace you have to cite it as follows:

Kosakovsky Pond SL, Weaver S, Leigh Brown AJ, Wertheim JO. HIV-TRACE (TRAnsmission Cluster Engine): a Tool for Large Scale Molecular Epidemiology of HIV-1 and Other Rapidly Evolving Pathogens. Mol Biol Evol. 2018 Jul 1;35(7):1812-1819. doi: 10.1093/molbev/msy016.