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• Sample SLURM Scripts
  .../, and can be copied from there. If you choose to copy one of these sample scripts, please make sure you understand what each <code>#SBATCH</code> directive b ...or communication between jobs, view [[Multi-Threaded & Message Passing Job Scripts]]
  11 KB (1,685 words) - 14:21, 4 October 2023
• Amber Job Sample Scripts
  1 KB (171 words) - 21:18, 5 December 2022

Page text matches

• SLURM Scripts
  #REDIRECT [[Amber Job Sample Scripts]]
  38 bytes (5 words) - 17:37, 26 June 2017
• Bracken
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...produces accurate species- and genus-level abundance estimates even when a sample contains two or more near-identical species.
  3 KB (402 words) - 19:01, 10 June 2022
• PsiCLASS
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...s from among those encoded in the graph, based on the read support in each sample. <br>
  4 KB (480 words) - 15:00, 14 December 2022
• PAML
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> * HPC_{{uc:{{#var:app}}}}_CTL - sample .ctl files directory
  3 KB (367 words) - 20:12, 12 August 2022
• SEQPower
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> SEQPower provides statistical power analysis and sample size estimation for sequence-based association studies.
  2 KB (274 words) - 22:38, 21 August 2022
• GTOOL
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...be subsetted are specified using the --g and --s options. The genotype and sample files should be in the format specified by the FILE FORMAT webpage.
  3 KB (319 words) - 12:51, 10 September 2020
• Alfred
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...is an efficient and versatile command-line application that computes multi-sample quality control metrics in a read-group aware manner. Alfred supports read
  3 KB (294 words) - 19:29, 14 November 2022
• Fastq-tools
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> *fastq-sample : randomly sample reads, with or without replacement
  3 KB (306 words) - 17:31, 10 June 2022
• MetaMaps
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> It simultaenously carries out read assignment and sample composition estimation.
  3 KB (322 words) - 19:25, 14 December 2021
• AMRPlusPlus
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...mple or set of samples. You may want to know what is contained within your sample or how abundant a given sequence is relative to another.
  3 KB (365 words) - 21:19, 6 December 2019
• MaSuRCA
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> * HPC_{{uc:{{#var:app}}}}_CFG - sample configuration file directory
  3 KB (340 words) - 18:24, 18 August 2022
• QDD
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> ...configuration file directory. Copy the '<code>set_qdd_default.ini</code>' sample configuration file to your working directory and adjust as needed.
  4 KB (485 words) - 20:08, 21 August 2022
• PolyGembler
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...pping marker set to contigs, polyGembler infers contig haplotypes for each sample. Contig haplotypes are then used to infer linkage groups corresponding to c
  3 KB (344 words) - 13:45, 3 November 2020
• Nvidia CUDA Toolkit
  |{{#vardefine:pbs|1}} <!--JOB SCRIPTS--> ==Sample GPU Batch Job Scripts==
  4 KB (543 words) - 13:44, 20 November 2023
• FALCON
  |{{#vardefine:pbs|}} <!--PBS SCRIPTS--> ...o set a memory limit on kmer search with -M. See [[FALCON_fc_large_run_cfg|sample SLURM fc_large_run.cfg]] for an example.
  3 KB (395 words) - 15:19, 15 August 2022
• Strelka
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...analysis by accounting for possible tumor cell contamination in the normal sample. A final empirical variant re-scoring step using random forest models train
  3 KB (369 words) - 14:24, 10 October 2023
• Saffrontree
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...7 house keeping genes. SaffronTree utilises all of the genomic data in the sample to create a visual representation of the clustering of the data. It support
  3 KB (400 words) - 17:17, 31 May 2022
• SNPGenie
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...priate to sequence the pooled nucleic acid content of the virus in a blood sample from that host. Comparing πN and πS for a gene product, or comparing gene
  3 KB (423 words) - 18:41, 1 June 2022
• Eukulele
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> # Metagenomic or metatranscriptomic sample files (unless using the provided sample data)
  4 KB (453 words) - 22:12, 8 March 2024
• MANTA
  |{{#vardefine:job|}} <!--JOB SCRIPTS--> ...small sets of diploid samples and somatic variants in matched tumor/normal sample pairs. There is experimental support for analysis of unmatched tumor sample
  3 KB (432 words) - 19:27, 10 June 2022

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