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• Category:NGS
  209 members (2 subcategories, 0 files) - 21:43, 24 October 2022
• Ngs-bits
  |{{#vardefine:url|https://github.com/imgag/ngs-bits}}
  3 KB (296 words) - 16:57, 10 June 2022
• NGS-SDK
  |{{#vardefine:app|ngs-sdk}} |{{#vardefine:url|https://github.com/ncbi/ngs}}
  3 KB (320 words) - 17:11, 19 August 2022

Page text matches

• Category:RNA-Seq
  [[Category:NGS]][[Category:Software]]
  28 members (0 subcategories, 0 files) - 15:28, 23 August 2022
• Category:Assembly
  [[Category:Biology]][[Category:NGS]][[Category:Software]]
  20 members (0 subcategories, 0 files) - 15:24, 23 August 2022
• PGDSpider
  [[Category:Software]][[Category:Biology]][[Category:NGS]] .... However, since PGDSpider allows one to convert specific subsets of these NGS files into any other format, one could use this feature to calculate parame
  3 KB (387 words) - 19:04, 10 June 2022
• AMPtk
  [[Category:Software]][[Category:Biology]][[Category:NGS]] ...mplicon data using USEARCH and VSEARCH, it can also be used to process any NGS amplicon data and includes databases setup for analysis of fungal ITS, fung
  2 KB (289 words) - 12:41, 12 August 2022
• Biolite
  BioLite provides generalized components aimed at developers of NGS analyses workflows. These include: * A 'catalog' database for pairing metadata with and organizing NGS data files.
  3 KB (362 words) - 12:54, 15 August 2022
• GMcloser
  [[Category:Software]][[Category:Biology]][[Category:NGS]] ...ation sequencing (NGS) reads. Unlike other gap-closing tools that use only NGS reads, GMcloser uses preassembled contig sets or long read sets as the sequ
  3 KB (321 words) - 17:25, 10 June 2022
• DCC
  [[Category:Software]][[Category:biology]][[Category:NGS]] detects back-splice junctions in ngs data
  2 KB (236 words) - 18:45, 12 August 2022
• VarScan
  [[Category:Software]][[Category:Biology]][[Category:NGS]] ...ped at the Genome Institute at Washington University to detect variants in NGS data.
  3 KB (324 words) - 20:54, 12 August 2022
• Scalpel
  [[Category:Software]][[Category:Biology]][[Category:NGS]] Bioinformatics pipeline for discovery of genetic variants from NGS reads.
  2 KB (239 words) - 22:07, 21 August 2022
• Je
  [[Category:Software]][[Category:Biology]][[Category:NGS]] Je tool suite for de-multiplexing and PCR duplicate removal of NGS datasets.
  2 KB (242 words) - 14:44, 10 June 2022
• GEM
  [[Category:Software]] [[Category:Biology]] [[Category:NGS]][[Category:Sequencing]] The Genome Mappability Analysis suite is used for measuring how well NGS reads can be mapped to reference genomes, especially for discovering variat
  2 KB (254 words) - 17:00, 15 August 2022
• Pcangsd
  [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] ...frequencies as prior information for the unobserved genotypes in low-depth NGS data.
  3 KB (343 words) - 18:21, 8 December 2023
• RTGTools
  [[Category:Software]][[Category:Biology]][[Category:NGS]] ...mpare multiple VCF files, as well as utilities for processing other common NGS data formats.
  2 KB (254 words) - 15:06, 10 June 2022
• LASTZ
  [[Category:Software]][[Category:Biology]][[Category:NGS]] ...es and from different species, it is also useful for sequences produced by NGS sequencing technologies such as Roche 454.
  2 KB (284 words) - 19:30, 12 August 2022
• SortMeRNA
  [[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]] ...a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast
  3 KB (299 words) - 17:00, 10 June 2022
• NGS-SDK
  |{{#vardefine:app|ngs-sdk}} |{{#vardefine:url|https://github.com/ncbi/ngs}}
  3 KB (320 words) - 17:11, 19 August 2022
• ContaVect
  ...d pipeline can however be used for wider purpose requiring to identify map NGS datasets consisting of a mix of DNA sequences on multiple references. It co
  3 KB (309 words) - 20:40, 10 June 2022
• GSNP
  [[Category:Software]][[Category:Biology]][[Category:NGS]] As the development of the second generation sequencing technology (NGS), research about the genetic variation can be realized by sequencing about
  3 KB (459 words) - 17:27, 15 August 2022
• Geomxngspipeline
  ...x NGS Pipeline, developed by NanoString, is an essential part of the GeoMx NGS workflow. The Pipeline processes RNA-sequencing files (FASTQ files) from Il
  3 KB (332 words) - 17:51, 29 January 2024
• QualiMap
  *bamqc - Evaluate NGS mapping to a reference genome *multi-bamqc - Compare QC reports from multiple NGS mappings
  3 KB (326 words) - 19:32, 24 August 2022

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