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...them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA + CovB) to their relative coverage (CovB / (CovA + Cov

...he trimmed leng th and delete ratio with the accuracy level. The practical Kmer size should be chosen based on the genome characteristic.

|{{#vardefine:url|https://github.com/refresh-bio/kmer-db}} Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (inde

...meta-velvetg (using a max kmer of 31) and meta-velvetg_MAX99 (using a max kmer of 99). There are also multiple contributed scripts available in the same l Velvet memory requirements increase dramatically with each kmer length increase, so the default velveth and velvetg binaries only handle km

...equency larger than 65535 will be recorded as 65535. The program store all kmer frequency values in a 4^K size array of 16-bit integer (2 bytes), using the

...is 'meryl', a near total rewrite of 'meryl' that appeared in both project kmer and Celera Assembler.

...assemblies using 10X Genomics GemCode/Chromium data. This project is a new kmer-based (alignment free) implementation of ARCS. It provides improved runtime

Rcorrector(RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data.

...ent-based approaches, and its output is more information-rich than that of kmer-spectra-based methods. For example, each MetaMaps alignment comes with an a

31, 63 and 127 maximum kmer size versions are available as SOAPdenovo31mer (SOAPdenovo binary), SOAPden

[https://doi.org/10.1101/453142 Harris SR. 2018. SKA: Split Kmer Analysis Toolkit for Bacterial Genomic Epidemiology. bioRxiv 453142 doi: ht

...a larger run consider modifying DAligner options to set a memory limit on kmer search with -M. See [[FALCON_fc_large_run_cfg|sample SLURM fc_large_run.cfg

...e novo assemblies. SaffronTree takes FASTQ/FASTA files as input and uses a kmer analysis to build a phylogenetic neighbour joining tree in newick format. I

* kmer - 1934