Difference between revisions of "Yasra"
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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|yasra}} |{{#vardefine:url|http://www.bx.psu.edu/miller_lab/}} <!--CONFIGURATION: OPTIONAL (|1}} means ...") |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{#uppercase:{{#var:app}}}}_DIR | + | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{#uppercase:{{#var:app}}}}_BIN | + | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 20:38, 12 January 2018
Description
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes makes use of LASTZ (Harris et al), a pairwise sequence aligner compatible with BLASTZ. Special scoring sets were derived to improve the performance, both in runtime and quality for 454 and Illumina sequence reads.
Required Modules
Serial
- yasra
System Variables
- HPC_{{#uppercase:yasra}}_DIR - installation directory
- HPC_{{#uppercase:yasra}}_BIN - executable directory
