Difference between revisions of "Yasra"

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==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory

Revision as of 20:38, 12 January 2018


yasra website  

YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes makes use of LASTZ (Harris et al), a pairwise sequence aligner compatible with BLASTZ. Special scoring sets were derived to improve the performance, both in runtime and quality for 454 and Illumina sequence reads.

Required Modules


  • yasra

System Variables

  • HPC_{{#uppercase:yasra}}_DIR - installation directory
  • HPC_{{#uppercase:yasra}}_BIN - executable directory