Difference between revisions of "YASRA"
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Revision as of 14:16, 27 May 2022
Description
yasra website
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes makes use of LASTZ (Harris et al), a pairwise sequence aligner compatible with BLASTZ. Special scoring sets were derived to improve the performance, both in runtime and quality for 454 and Illumina sequence reads.
Required Modules
Serial
- yasra
System Variables
- HPC_YASRA_DIR - installation directory
- HPC_YASRA_BIN - executable directory